1994 cutlass convertible windows

[miltonv81]

Here's me issue.  Alternator died and the windows and top quit working along with all the guages.  Replaced alternator, guages are back working but the windows now when you turn the key on they will work sometimes and sometimes not in conjunction with the top.  Open the door when they are working all is fine till you close the door past the second detent then they quit working.  Initially thought it was the circuit breaker and that is assuming the same breaker controls the windows and top.  Now thinking the connector for the door to body but I wouldn't think the the wiring for the top would go through that connector, no sure.

 

any body ever experience this?